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USC-OGP 2-DE database
Two-dimensional polyacrylamide gel electrophoresis database
USC-OGP 2-DE database
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Searching in 'USC-OGP 2-DE database' for entry
matching:
P62807
USC-OGP 2-DE database
:
P62807
P62807
General information about the entry
View entry in simple text format
Entry name
H2BH_HUMAN
Primary accession number
P62807
Secondary accession number(s)
Q93078
integrated into USC-OGP 2-DE database on
January 17, 2017 (release 1)
2D Annotations were last modified on
January 17, 2017 (version 1)
General Annotations were last modified on
April 5, 2017 (version 2)
Name and origin of the protein
Description
RecName: Full=Histone H2B type 1-C/E/F/G/I; AltName: Full=Histone H2B.1 A; AltName: Full=Histone H2B.a; Short=H2B/a; AltName: Full=Histone H2B.g; Short=H2B/g; AltName: Full=Histone H2B.h; Short=H2B/h; AltName: Full=Histone H2B.k; Short=H2B/k; AltName: Full=Histone H2B.l; Short=H2B/l;.
Gene name
Name=HIST1H2BC
Synonyms=H2BFL
and
Name=HIST1H2BE
Synonyms=H2BFH
and
Name=HIST1H2BF
Synonyms=H2BFG
and
Name=HIST1H2BG
Synonyms=H2BFA
and
Name=HIST1H2BI
Synonyms=H2BFK
Annotated species
Homo sapiens (Human) [TaxID:
9606
]
Taxonomy
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
References
[1]
2D GEL CHARACTERIZATION
Author 1., Author 2.
Submitted (Mar-2011) to Current
2D PAGE maps for identified proteins
How to interpret a protein
UVEAL_MELANOMA_3-10
{UVEAL MELANOMA 3-10}
Homo sapiens (Human)
map experimental info
UVEAL_MELANOMA_3-10
MAP LOCATIONS:
SPOT OGP-1329
:
pI=4.39; Mw=16914
SPOT OGP-1331
:
pI=5.13; Mw=16684
Cross-references
UniProtKB/Swiss-Prot
P62807; H2B1C_HUMAN.
2D PAGE maps for identified proteins
How to interpret a protein map
You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
Warning 1
: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
Warning 2
: the 2D PAGE map is built on demand. This may take some few seconds to be computed.
External data extracted from
UniProtKB/Swiss-Prot
Extracted from
UniProtKB/Swiss-Prot
, release:
0.0
Entry name
H2B1C_HUMAN
Primary accession number
P62807
Secondary accession number(s)
P02278 Q3B872 Q4VB69 Q93078 Q93080
Sequence was last modified on
March 2, 2010 (version 4)
Annotations were last modified on
March 15, 2017 (version 148)
Name and origin of the protein
Description
RecName: Full=Histone H2B type 1-C/E/F/G/I; AltName: Full=Histone H2B.1 A; AltName: Full=Histone H2B.a; Short=H2B/a; AltName: Full=Histone H2B.g; Short=H2B/g; AltName: Full=Histone H2B.h; Short=H2B/h; AltName: Full=Histone H2B.k; Short=H2B/k; AltName: Full=Histone H2B.l; Short=H2B/l;
Gene name
Name=HIST1H2BC
Synonyms=H2BFL
and
Name=HIST1H2BE
Synonyms=H2BFH
and
Name=HIST1H2BF
Synonyms=H2BFG
and
Name=HIST1H2BG
Synonyms=H2BFA
and
Name=HIST1H2BI
Synonyms=H2BFK
Encoded on
Name=HIST1H2BC; Synonyms=H2BFL; and Name=HIST1H2BE; Synonyms=H2BFH; and Name=HIST1H2BF; Synonyms=H2BFG; and Name=HIST1H2BG; Synonyms=H2BFA; and Name=HIST1H2BI; Synonyms=H2BFK
Keywords
3D-structure
;
Acetylation
;
Antibiotic
;
Antimicrobial
;
Chromosome
;
Complete proteome
;
Direct protein sequencing
;
DNA-binding
;
Glycoprotein
;
Isopeptide bond
;
Methylation
;
Nucleosome core
;
Nucleus
;
Phosphoprotein
;
Polymorphism
;
Reference proteome
;
Ubl conjugation
.
Copyright
Copyrighted by the UniProt Consortium, see
http://www.uniprot.org/help/license
. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL
M60750; AAA63189.1
; -; Genomic_DNA
EMBL
Z80782; CAB02544.1
; -; Genomic_DNA
EMBL
Z80779; CAB02541.1
; -; Genomic_DNA
EMBL
Z80780; CAB02542.1
; -; Genomic_DNA
EMBL
Z80783; CAB02545.1
; -; Genomic_DNA
EMBL
AF531286; AAN06686.1
; -; Genomic_DNA
EMBL
AF531288; AAN06688.1
; -; Genomic_DNA
EMBL
AF531289; AAN06689.1
; -; Genomic_DNA
EMBL
AF531290; AAN06690.1
; -; Genomic_DNA
EMBL
AF531292; AAN06692.1
; -; Genomic_DNA
EMBL
AL031777; CAC03411.1
; -; Genomic_DNA
EMBL
AL031777; CAC03417.1
; -; Genomic_DNA
EMBL
AL031777; CAC03420.1
; -; Genomic_DNA
EMBL
AL353759; CAC04130.1
; -; Genomic_DNA
EMBL
BC001131; -
; NOT_ANNOTATED_CDS; mRNA
EMBL
BC009612; -
; NOT_ANNOTATED_CDS; mRNA
EMBL
BC096120; AAH96120.1
; -; mRNA
EMBL
BC096122; AAH96122.1
; -; mRNA
EMBL
BC096123; AAH96123.1
; -; mRNA
EMBL
BC101653; AAI01654.1
; -; mRNA
EMBL
BC101655; AAI01656.1
; -; mRNA
EMBL
BC101748; AAI01749.1
; -; mRNA
EMBL
BC101750; AAI01751.1
; -; mRNA
EMBL
BC106899; AAI06900.1
; -; mRNA
CCDS
CCDS4584.1; -
; .
CCDS
CCDS4588.1; -
; .
CCDS
CCDS4592.1; -
; .
CCDS
CCDS4594.1; -
; .
CCDS
CCDS4603.1; -
; .
PIR
E40335; HSHUB2
; .
PIR
S65409; S65409
; .
RefSeq
NP_003509.1; NM_003518.3
; .
RefSeq
NP_003513.1; NM_003522.3
; .
RefSeq
NP_003514.2; NM_003523.2
; .
RefSeq
NP_003516.1; NM_003525.2
; .
RefSeq
NP_003517.2; NM_003526.2
; .
RefSeq
NP_066407.1; NM_021063.3
; .
UniGene
Hs.182137; -
; .
UniGene
Hs.534369; -
; .
UniGene
Hs.553506; -
; .
UniGene
Hs.591797; -
; .
UniGene
Hs.591809; -
; .
UniGene
Hs.658713; -
; .
UniGene
Hs.726509; -
; .
PDB
5KGF; EM
; 4.54 A; D/H=1-126
PDBsum
5KGF; -
; .
ProteinModelPortal
P62807; -
; .
SMR
P62807; -
; .
BioGrid
109270; 17
; .
BioGrid
113935; 219
; .
BioGrid
113939; 4
; .
BioGrid
113940; 7
; .
BioGrid
113942; 4
; .
BioGrid
113943; 22
; .
DIP
DIP-32890N; -
; .
IntAct
P62807; 27
; .
MINT
MINT-276222; -
; .
STRING
9606.ENSP00000366962; -
; .
iPTMnet
P62807; -
; .
PhosphoSitePlus
P62807; -
; .
SwissPalm
P62807; -
; .
BioMuta
HIST1H2BC; -
; .
DMDM
290457686; -
; .
EPD
P62807; -
; .
MaxQB
P62807; -
; .
PaxDb
P62807; -
; .
PeptideAtlas
P62807; -
; .
PRIDE
P62807; -
; .
TopDownProteomics
P62807; -
; .
DNASU
8339; -
; .
DNASU
8344; -
; .
DNASU
8347; -
; .
Ensembl
ENST00000314332; ENSP00000321744
; ENSG00000180596; .
Ensembl
ENST00000356530; ENSP00000348924
; ENSG00000277224; .
Ensembl
ENST00000377733; ENSP00000366962
; ENSG00000278588; .
Ensembl
ENST00000396984; ENSP00000380180
; ENSG00000180596; .
Ensembl
ENST00000541790; ENSP00000445633
; ENSG00000273802; .
Ensembl
ENST00000614097; ENSP00000483237
; ENSG00000274290; .
Ensembl
ENST00000634910; ENSP00000489317
; ENSG00000274290; .
GeneID
3017; -
; .
GeneID
8339; -
; .
GeneID
8343; -
; .
GeneID
8344; -
; .
GeneID
8346; -
; .
GeneID
8347; -
; .
KEGG
hsa:3017; -
; .
KEGG
hsa:8339; -
; .
KEGG
hsa:8343; -
; .
KEGG
hsa:8344; -
; .
KEGG
hsa:8346; -
; .
KEGG
hsa:8347; -
; .
UCSC
uc003ngk.5; human
; .
CTD
3017; -
; .
CTD
8339; -
; .
CTD
8343; -
; .
CTD
8344; -
; .
CTD
8346; -
; .
CTD
8347; -
; .
DisGeNET
3017; -
; .
DisGeNET
8339; -
; .
DisGeNET
8343; -
; .
DisGeNET
8344; -
; .
DisGeNET
8346; -
; .
DisGeNET
8347; -
; .
GeneCards
HIST1H2BC; -
; .
GeneCards
HIST1H2BE; -
; .
GeneCards
HIST1H2BF; -
; .
GeneCards
HIST1H2BG; -
; .
GeneCards
HIST1H2BI; -
; .
HGNC
HGNC:4757; HIST1H2BC
; .
HGNC
HGNC:4753; HIST1H2BE
; .
HGNC
HGNC:4752; HIST1H2BF
; .
HGNC
HGNC:4746; HIST1H2BG
; .
HGNC
HGNC:4756; HIST1H2BI
; .
HPA
HPA042205; -
; .
HPA
HPA043013; -
; .
HPA
HPA048671; -
; .
MIM
602798; gene
; .
MIM
602804; gene
; .
MIM
602805; gene
; .
MIM
602807; gene
; .
MIM
602847; gene
; .
neXtProt
NX_P62807; -
; .
OpenTargets
ENSG00000180596; -
; .
OpenTargets
ENSG00000273802; -
; .
OpenTargets
ENSG00000274290; -
; .
OpenTargets
ENSG00000277224; -
; .
OpenTargets
ENSG00000278588; -
; .
PharmGKB
PA29132; -
; .
eggNOG
KOG1744; Eukaryota
; .
eggNOG
ENOG4111NV5; LUCA
; .
GeneTree
ENSGT00760000118976; -
; .
HOGENOM
HOG000231213; -
; .
HOVERGEN
HBG007774; -
; .
InParanoid
P62807; -
; .
KO
K11252; -
; .
OMA
KATHAFN; -
; .
OrthoDB
EOG091G0XGD; -
; .
PhylomeDB
P62807; -
; .
TreeFam
TF300212; -
; .
Reactome
R-HSA-1221632; Meiotic synapsis
; .
Reactome
R-HSA-171306; Packaging Of Telomere Ends
; .
Reactome
R-HSA-201722; Formation of the beta-catenin:TCF transactivating complex
; .
Reactome
R-HSA-212300; PRC2 methylates histones and DNA
; .
Reactome
R-HSA-2299718; Condensation of Prophase Chromosomes
; .
Reactome
R-HSA-2559580; Oxidative Stress Induced Senescence
; .
Reactome
R-HSA-2559582; Senescence-Associated Secretory Phenotype (SASP)
; .
Reactome
R-HSA-2559586; DNA Damage/Telomere Stress Induced Senescence
; .
Reactome
R-HSA-3214815; HDACs deacetylate histones
; .
Reactome
R-HSA-3214847; HATs acetylate histones
; .
Reactome
R-HSA-427359; SIRT1 negatively regulates rRNA Expression
; .
Reactome
R-HSA-427389; ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression
; .
Reactome
R-HSA-427413; NoRC negatively regulates rRNA expression
; .
Reactome
R-HSA-5250924; B-WICH complex positively regulates rRNA expression
; .
Reactome
R-HSA-5334118; DNA methylation
; .
Reactome
R-HSA-5578749; Transcriptional regulation by small RNAs
; .
Reactome
R-HSA-5617472; Activation of anterior HOX genes in hindbrain development during early embryogenesis
; .
Reactome
R-HSA-5625886; Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3
; .
Reactome
R-HSA-5689880; Ub-specific processing proteases
; .
Reactome
R-HSA-5693565; Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks
; .
Reactome
R-HSA-5693571; Nonhomologous End-Joining (NHEJ)
; .
Reactome
R-HSA-5693607; Processing of DNA double-strand break ends
; .
Reactome
R-HSA-606279; Deposition of new CENPA-containing nucleosomes at the centromere
; .
Reactome
R-HSA-69473; G2/M DNA damage checkpoint
; .
Reactome
R-HSA-73728; RNA Polymerase I Promoter Opening
; .
Reactome
R-HSA-73777; RNA Polymerase I Chain Elongation
; .
Reactome
R-HSA-8866654; E3 ubiquitin ligases ubiquitinate target proteins
; .
Reactome
R-HSA-912446; Meiotic recombination
; .
Reactome
R-HSA-977225; Amyloid fiber formation
; .
ChiTaRS
HIST1H2BC; human
; .
ChiTaRS
HIST1H2BE; human
; .
ChiTaRS
HIST1H2BG; human
; .
GeneWiki
HIST1H2BE; -
; .
GeneWiki
HIST1H2BF; -
; .
GeneWiki
HIST1H2BG; -
; .
GeneWiki
HIST1H2BI; -
; .
GeneWiki
Histone_H2B_type_1-C; -
; .
Proteomes
UP000005640; Chromosome 6
; .
Bgee
ENSG00000168242; -
; .
CleanEx
HS_HIST1H2BC; -
; .
CleanEx
HS_HIST1H2BE; -
; .
CleanEx
HS_HIST1H2BF; -
; .
CleanEx
HS_HIST1H2BG; -
; .
CleanEx
HS_HIST1H2BI; -
; .
ExpressionAtlas
P62807; baseline and differential
; .
Genevisible
P62807; HS
; .
GO
GO:0005829; C:cytosol
; IDA:HPA; .
GO
GO:0070062; C:extracellular exosome
; IDA:UniProtKB; .
GO
GO:0005615; C:extracellular space
; IDA:UniProtKB; .
GO
GO:0005654; C:nucleoplasm
; IDA:HPA; .
GO
GO:0000786; C:nucleosome
; NAS:UniProtKB; .
GO
GO:0005634; C:nucleus
; IDA:UniProtKB; .
GO
GO:0003677; F:DNA binding
; NAS:UniProtKB; .
GO
GO:0019731; P:antibacterial humoral response
; IDA:UniProtKB; .
GO
GO:0050830; P:defense response to Gram-positive bacterium
; IDA:UniProtKB; .
GO
GO:0002227; P:innate immune response in mucosa
; IDA:UniProtKB; .
GO
GO:0006334; P:nucleosome assembly
; NAS:UniProtKB; .
GO
GO:0016567; P:protein ubiquitination
; TAS:Reactome; .
Gene3D
1.10.20.10; -
; 1; .
InterPro
IPR009072; Histone-fold
; .
InterPro
IPR007125; Histone_H2A/H2B/H3
; .
InterPro
IPR000558; Histone_H2B
; .
PANTHER
PTHR23428; PTHR23428
; 1; .
Pfam
PF00125; Histone
; 1; .
PRINTS
PR00621; HISTONEH2B
; .
SMART
SM00427; H2B
; 1; .
SUPFAM
SSF47113; SSF47113
; 1; .
PROSITE
PS00357; HISTONE_H2B
; 1; .
Gateways to other related servers
The World-2DPAGE Constellation
- Entry point to the world-wide 2-DPAGE resources.
World-2DPAGE Repository
- A public repository for gel-based proteomics data linked to protein identification published in the literature.
World-2DPAGE Portal
- A dynamic portal to query simultaneously world-wide gel-based proteomics databases.
SWISS-2DPAGE
- The Geneva Two-dimensional polyacrylamide gel electrophoresis database.
ExPASy
- The resources web server of the
Swiss Institute of Bioinformatics
Database constructed and maintained by
Angel Garcia
, using the
Make2D-DB II
package (
ver. 3.10.2
) from the
World-2DPAGE Constellation
of the
ExPASy web server
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